Skull Rock appeared in Kingdom Hearts 358/2 Days where Roxas fight Ruler of the Sky on Day 301, and collect organization emblems on Day 325. Skull Rock appears in Kingdom Hearts: Birth by Sleep as a location for Terra's boss fight with Peter Pan after Captain Hook convinces the naive lad to assist him against his great foe.
Skull Rock appears under the name Skull Island, and is where Captain Hook placed a series of Beetleworx conversion machines that have been transforming pirates into robotic monsters. Mickey must shut the machines down, reverse their effects or leave them alone entirely.
Skull Rock appeared in the episode "The Key to Skull Rock" where Jake, Izzy, Cubby and Skully journey to Skull Rock to unlock a door with a key given to them by Peter Pan. Inside the door lies an observatory. The cavern was also seen in "Birds of a Feather" and "Trick or Treasure". The cave is also seen in Jake and the Never Land Pirates: Peter Pan Returns when Hook and his crew try to get away from Jake's pirate crew and Peter Pan.